| Pos. | Mannschaft | Gegentore |
|---|---|---|
| 1 | 1. FC Union Berlin | 23 |
| 2 | Fortuna Düsseldorf II | 33 |
| 3 | Kickers Offenbach | 35 |
| 4 | SC Paderborn | 38 |
| 5 | Bayern II | 38 |
| 6 | Erzgebirge Aue | 43 |
| 7 | Kickers Emden | 44 |
| 8 | Wuppertaler SV | 45 |
| 9 | SpVgg Unterhaching | 46 |
| 10 | Dynamo Dresden | 46 |
| 11 | Rot-Weiß Erfurt | 48 |
| 12 | VfB Stuttgart II | 50 |
| 13 | Eintracht Braunschweig | 51 |
| 14 | Jahn Regensburg | 51 |
| 15 | SV Sandhausen | 52 |
| 16 | Werder Bremen II | 58 |
| 17 | Carl Zeiss Jena | 59 |
| 18 | VfR Aalen | 60 |
| 19 | Wacker Burghausen | 65 |
| 20 | Stuttgarter Kickers | 71 |